Efficient tilings of de Bruijn and Kautz graphs

Kautz and de Bruijn graphs have a high degree of connectivity which makes them ideal candidates for massively parallel computer network topologies. In order to realize a practical computer architecture based on these graphs, it is useful to have a means of constructing a large-scale system from smaller, simpler modules. In this paper we consider the mathematical problem of uniformly tiling a de Bruijn or Kautz graph. This can be viewed as a generalization of the graph bisection problem. We focus on the problem of graph tilings by a set of identical subgraphs. Tiles should contain a maximal number of internal edges so as to minimize the number of edges connecting distinct tiles. We find necessary and sufficient conditions for the construction of tilings. We derive a simple lower bound on the number of edges which must leave each tile, and construct a class of tilings whose number of edges leaving each tile agrees asymptotically in form with the lower bound to within a constant factor. These tilings make possible the construction of large-scale computing systems based on de Bruijn and Kautz graph topologies.Comment: 29 pages, 11 figure

Improving South African medical curricula related to traditional health systems

Background. Increased co-ordination and co-operation between traditional and biomedical health systems in South Africa (SA) is a national priority. To improve care, practitioners in both systems must learn to recognise the value of their parallel counterparts, and such lessons should begin in medical school. However, there is little research regarding the way in which SA’s medical students are taught to interact with the traditional medicine (TM) system. Objectives. To explore how SA medical students perceive their curriculum as it relates to the traditional health system and to describe their suggestions for improvement. Methods. We conducted individual in-depth interviews and focus group discussions with 43 final-year medical students across 3 SA medical schools. We applied thematic analysis to improve our understanding of student-reported experiences with TM in their medical school curricula. Results. All 3 medical schools rely heavily on hidden curricula to educate students on the SA traditional health system. These hidden curricula are largely negative and learnt primarily from witnessing faculty-client interactions involving TM use. Students across the institutions agree that this problematic deficit in formal teaching contributes to their incompetence in treating patients who use TM. Their suggestions for improvement focused largely around 3 themes: (i) understanding the fundamentals of the traditional health system; (ii) empathising with patient use of TM; and (iii) promoting broader structural integration of the two health systems. Conclusion. Medical students in SA recognise the value of increased exposure to and education surrounding the traditional health system. Future curricular interventions should focus on increasing formal teaching of TM, directly addressing the hidden curriculum related to the topic, and instituting policies and initiatives that improve integration of the SA biomedical and traditional healing paradigms on a structural level

Serum antibodies from Parkinson's disease patients react with neuronal membrane proteins from a mouse dopaminergic cell line and affect its dopamine expression

Evidence exists suggesting that the immune system may contribute to the severity of idiopathic Parkinson's disease (IPD). The data presented here demonstrates that antibodies in the sera of patients with IPD have increased binding affinity to dopaminergic (DA) neuronal (MN9D cell line) membrane antigens in comparison to antibodies in sera from healthy controls. In general, the degree of antibody reactivity to these antigens of the mouse MN9D cell line appears to correlate well with the disease severity of the IPD patients contributing sera, based on the total UPDRS scores. Surprisingly, the sera from IPD patients enhanced the DA content of MN9D cells differentiated with n-butyrate; the n-butyrate-differentiated MN9D cells had a greater concentration of DA (DA/mg total protein) than undifferentiated MN9D cells, especially early in culture. Although the IPD sera did not directly harm MN9D cellular viability or DA production, in the presence of the N9 microglial cell line, the amount of DA present in cultures of untreated or n-butyrate-treated MN9D cells was lowered by the IPD sera. The results suggest the involvement of antibodies in the decline of dopamine production and, thus, the potential of immune system participation in IPD

Human Performance Contributions to Safety in Commercial Aviation

In the commercial aviation domain, large volumes of data are collected and analyzed on the failures and errors that result in infrequent incidents and accidents, but in the absence of data on behaviors that contribute to routine successful outcomes, safety management and system design decisions are based on a small sample of non- representative safety data. Analysis of aviation accident data suggests that human error is implicated in up to 80% of accidents, which has been used to justify future visions for aviation in which the roles of human operators are greatly diminished or eliminated in the interest of creating a safer aviation system. However, failure to fully consider the human contributions to successful system performance in civil aviation represents a significant and largely unrecognized risk when making policy decisions about human roles and responsibilities. Opportunities exist to leverage the vast amount of data that has already been collected, or could be easily obtained, to increase our understanding of human contributions to things going right in commercial aviation. The principal focus of this assessment was to identify current gaps and explore methods for identifying human success data generated by the aviation system, from personnel and within the supporting infrastructure

Transcribed B lymphocyte genes and multiple sclerosis risk genes are underrepresented in Epstein–Barr Virus hypomethylated regions

Epstein–Barr Virus (EBV) infection appears to be necessary for the development of Multiple Sclerosis (MS), although the specific mechanisms are unknown. More than 200 single-nucleotide polymorphisms (SNPs) are known to be associated with the risk of developing MS. About a quarter of these are also highly associated with proximal gene expression in B cells infected with EBV (lymphoblastoid cell lines—LCLs). The DNA of LCLs is hypomethylated compared with both uninfected and activated B cells. Since methylation can affect gene expression, and so cell differentiation and immune evasion, we hypothesised that EBV-driven hypomethylation may affect the interaction between EBV infection and MS. We interrogated an existing dataset comprising three individuals with whole-genome bisulfite sequencing data from EBV transformed B cells and CD40L-activated B cells. DNA methylation surrounding MS risk SNPs associated with gene expression in LCLs (LCLeQTL) was less likely to be hypomethylated than randomly selected chromosomal regions. Differential methylation was independent of genomic features such as promoter regions, but genes preferentially expressed in EBV-infected B cells, including the LCLeQTL genes, were underrepresented in the hypomethylated regions. Our data does not indicate MS genetic risk is affected by EBV hypomethylation

Starlight Demonstration of the Dragonfly Instrument: an Integrated Photonic Pupil Remapping Interferometer for High Contrast Imaging

In the two decades since the first extra-solar planet was discovered, the detection and characterization of extra-solar planets has become one of the key endeavors in all of modern science. Recently direct detection techniques such as interferometry or coronography have received growing attention because they reveal the population of exoplanets inaccessible to Doppler or transit techniques, and moreover they allow the faint signal from the planet itself to be investigated. Next-generation stellar interferometers are increasingly incorporating photonic technologies due to the increase in fidelity of the data generated. Here, we report the design, construction and commissioning of a new high contrast imager; the integrated pupil-remapping interferometer; an instrument we expect will find application in the detection of young faint companions in the nearest star-forming regions. The laboratory characterisation of the instrument demonstrated high visibility fringes on all interferometer baselines in addition to stable closure phase signals. We also report the first successful on-sky experiments with the prototype instrument at the 3.9-m Anglo-Australian Telescope. Performance metrics recovered were consistent with ideal device behaviour after accounting for expected levels of decoherence and signal loss from the uncompensated seeing. The prospect of complete Fourier-coverage coupled with the current performance metrics means that this photonically-enhanced instrument is well positioned to contribute to the science of high contrast companions.Comment: 10 pages, 7 figures, accepted to Mon. Not. of Roy. Ast. Soc., 201

Low temperature magnetic phase diagram of the cubic non-Fermi liquid system CeIn_(3-x)Sn_x

In this paper we report a comprehensive study of the magnetic susceptibility (\chi), resistivity (\rho), and specific heat (C_P), down to 0.5 K of the cubic CeIn_(3-x)Sn_x alloy. The ground state of this system evolves from antiferromagnetic (AF) in CeIn_3(T_N=10.2 K) to intermediate-valent in CeSn_3, and represents the first example of a Ce-lattice cubic non-Fermi liquid (NFL) system where T_N(x) can be traced down to T=0 over more than a decade of temperature. Our results indicate that the disappearance of the AF state occurs near x_c ~ 0.7, although already at x ~ 0.4 significant modifications of the magnetic ground state are observed. Between these concentrations, clear NFL signatures are observed, such as \rho(T)\approx \rho_0 + A T^n (with n<1.5) and C_P(T)\propto -T ln(T) dependencies. Within the ordered phase a first order phase transition occurs for 0.25 < x < 0.5. With larger Sn doping, different weak \rho(T) dependencies are observed at low temperatures between x=1 and x=3 while C_P/T shows only a weak temperature dependence.Comment: 7 pages, 7 figures. Accepted in Eur. J. Phys.

Intramuscular myxoid lipoma in the proximal forearm presenting as an olecranon mass with superficial radial nerve palsy: a case report

<p>Abstract</p> <p>Background</p> <p>Extremity lipomas may occur in any location, including the proximal forearm. We describe a case of a patient with an intramuscular lipoma presenting as an unusual posterior elbow mass.</p> <p>Case presentation</p> <p>We discuss the case of a 57-year-old Caucasian man who presented with a tender, posterior elbow mass initially diagnosed as chronic olecranon bursitis. A minor sensory disturbance in the distribution of the superficial radial nerve was initially thought to be unrelated, but was likely caused by mass effect from the lipoma. No pre-operative advanced imaging was obtained because the diagnosis was felt to have already been made. At the time of surgery, a fatty mass originating in the volar forearm muscles was found to have breached the dorsal forearm fascia and displaced the olecranon bursa. Tissue diagnosis was made by histopathology as a myxoid lipoma with no aggressive features. Post-operative recovery was uneventful.</p> <p>Conclusion</p> <p>We present a case of an unusual elbow mass presenting with symptoms consistent with chronic olecranon bursitis, a relatively common condition. The only unexplained pre-operative finding was the non-specific finding of a transient superficial radial nerve deficit. We remind clinicians to be cautious when diagnosing soft tissue masses in the extremities when unexplained physical findings are present.</p

Detectability of low energy X-ray spectral components in type 1 AGN

In this paper we examine the percentage of type 1 AGN which require the inclusion of a soft excess component and/or significant cold absorption in the modelling of their X-ray spectra obtained by XMM-Newton. We do this by simulating spectra which mimic typical spectral shapes in order to find the maximum detectability expected at different count levels. We then apply a correction to the observed percentages found for the Scott et al. (2011) sample of 761 sources. We estimate the true percentage of AGN with a soft excess component to be 75+/-23%, suggesting that soft excesses are ubiquitous in the X-ray spectra of type 1 AGN. By carrying out joint fits on groups of low count spectra in narrow z bins in which additional spectral components were not originally detected, we show that the soft excess feature is recovered with a mean temperature kT and blackbody to power-law normalisation ratio consistent with those of components detected in individual high count spectra. Cold absorption with nH values broadly consistent with those reported in individual spectra are also recovered. We suggest such intrinsic cold absorption is found in a minimum of ~5% of type 1 AGN and may be present in up to ~10%.Comment: 10 pages, 6 figures, 4 tables. Accepted for publication in MNRA